GWAS Annotated: VSIG10

Gene: V-set and immunoglobulin domain containing 10

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
VSIG10GH12J117911-None0.0000Enhancer96-TF_co-expressionchr12:117911359-117911648-
RAD51NFYBUSF1TRIM28
VSIG10GH12J117968-12:117969995:C:G1.0169Promoter/Enhancer383EliteTF_co-expressionchr12:117968573-117970002ENSR12_BTF58, ENSR12_93PS8L
EZH2ZNF263ZBTB40ZNF217ZNF444HDAC1HNRNPKNFXL1MXI1SIN3APKNOX1CHD1RFX5EP300POLR2AZEB1DPF2RAD21CTCFPHF8YY1CEBPBELK1TBPMYCHDAC6NRF1CTBP1BACH1ASH2LPBX3ZFXJUNDIKZF1ELF1RBBP5ARNTKDM4AMNTHNRNPLLEGR1HES1KDM1AZBTB33ZHX2RESTBRCA1ZEB1CTBP1ZBTB11ZNF217ZBTB7BGATA3MYCZNF579ZNF687TCF12CLOCKIKZF1SP1ZNF512BZNF444L3MBTL2TAF1ZNF592
VSIG10GH12J118058-12:118058617:G:T0.8410Promoter/Enhancer696EliteeQTLs,Distancechr12:118058496-118065354ENSR12_CFPB8, ENSR12_93PT89, ENSR12_93PT8K, ENSR12_532QQT8, ENSR12_85GPHX, ENSR12_93PT99, WSB2_1, WSB2_2
NFYBRUNX3FOXA1POLR2GZNF24ZMYM3RBFOX2GATA1SP1DPF2SMARCA4GATA3POLR2AMYCFOXA1EBF1ATF3RESTPHF8KDM5BXRCC5MTA3MNTIKZF1GMEB1GATAD2BHDAC1SIN3AIKZF2ZNF24SMARCE1MXI1RUNX3PKNOX1RBM39MYCDPF2GATA3BACH1HNRNPLASH2LPOLR2GIRF1AGO2CREMIRF2ZFXZBTB7ATAF7KDM5ANR3C1SIN3ARB1MAXMYCETS1GABPAYY1PBX3CREMBHLHE40ELF1TFAP4USF1USF2E2F6EGR1GABPB1SP1TBPMTA2UBTFIKZF2TAF1TAF9BARID1BKDM4APMLBRD4ZNF24MBD2MTA1IRF1TAF7ZNF512BDPF2IKZF1SMAD5ELF4NCOA1KDM5BZBTB40AFF1ARNTPRDM10NFRKBE2F1JUNDNCOR1SMARCA4PHB2HDAC2TCF12EGR1ZNF143ZNF184STAT5AZNF639ARID2EP300TAL1CCAR2ATF7SMAD1GATAD2BHDAC1TBX21RUNX3CTCFHNRNPH1RBBP5EP400ZNF444MLLT1CHD1BRD9SMARCE1NBNZNF407NR3C1ZSCAN29MAXPCBP2MNTRBBP5EGR1RBM39SMARCE1TAF1MTA3ELF1ZBTB33HNRNPKZBTB7ASIX5ZNF282SOX6SIN3ASMAD5KDM5BTEAD4YY1PAX5DNMT1RB1E2F6RNF2CREB3L1POU2F2CTCFRAD21EEDMXI1MTA1RESTBRD4E2F1TBPNCOA1NFRKBBCL11ATRIM24NR2F2UBTFZFXRXRAJUNDNBNMLLT1ASH2LPHF8ZSCAN29ZBTB11TCF7L2ZNF444HNF4AZNF512BDPF2GABPAZNF384SP1TCF7JUNDNCOR1CREB1SMARCA5ZBTB33BCORZNF384ZNF592RBFOX2ATF4ATF3ATF7SMARCC2TRIM24C11orf30ATF2BHLHE40POLR2GPOLR2AJUNDCEBPBMAFKNFE2L2SOX6ASH2LCREMCHD4KDM1ARXRASP1ELF1HNF4ANCOR1HDAC2FOXA2FOXA1HNF4GEP300ETS1ARID3ARAD21TFAP4IKZF1CTCFMEIS2NRF1ZNF143RAD21CTBP1HDAC2HDAC1SPI1ZFP91POLR2AHMBOX1
VSIG10GH12J118088-12:118089124:T:C2.4217Enhancer105-eQTLs,Distancechr12:118088912-118089832-
HNF4AZBTB33SP1EGR1MAXRAD21RXRACTCFATF3YY1RESTJUNDFOS
VSIG10GH12J118101-12:118103325:GTCGGC:G0.6738Promoter/Enhancer548EliteeQTLs,Distancechr12:118101910-118104800ENSR12_BTFSJ, ENSR12_CFPFC, ENSR12_93PTNN, VSIG10_2, VSIG10_1
SIN3APOLR2AIKZF1MNTTBPZNF444RFX1DPF2CREB1GATA3PKNOX1ATF7FOXA1RCOR1NFIBJUNDELF1MYCGATAD2BSTAT3MAFFFOSCTCFCTBP1SMARCE1CTCFZKSCAN1MXI1MNTTBPRBM39BHLHE40ZBTB33SIN3AXRCC5USF1CHD1RBFOX2ETV4SAP30CLOCKCTCFMYCAGO2UBTFASH2LSMARCE1TAF15HDAC1KDM5BPOLR2APOLR2GPHF8KDM4AMTA3TAF1RNF2ZFXHNRNPUL1DPF2MBD2GATA3YY1MXI1RBBP5NRF1EP300CTBP1SP1SKIGABPAHNRNPLLAGO1U2AF1E2F6BRD4GATA4TFAP4RAD21RB1ZNF282TBPFUSETV4ELF1HDAC2IKZF1RESTZNF263SKILXRCC5MYCJUNDMEF2BRFX1TAF7TRIM28ZNF24EBF1
VSIG10GH12J118107-None0.0000Enhancer36-Distancechr12:118107815-118107961-
RXRAHNF4A
VSIG10GH12J118115-None0.0000Enhancer105-Distancechr12:118115815-118115965-
NR2F2RXRANR2F1NR2F6HNF4APOLR2AFOXA2FOXA1EP300
VSIG10GH12J118119-12:118120279:T:G5.4253Enhancer280EliteeQTLs,Distancechr12:118119323-118122995ENSR12_532R5P5, ENSR12_BTFX9, ENSR12_532R5XP
CTCFHDAC2ASH2LKDM1AZNF143RAD21JUNZBTB33ZNF444NFRKBIKZF1ZNF318MLLT1SMARCE1TRIM24PHB2HDAC1TCF12NCOA4RNF2MTA2CHD7ZNF592CTBP1SMARCA4ZBTB40MEF2BSOX6HDAC2CTCFRBBP5ELF4CBFA2T3IKZF2SP1NANOGTAL1ZEB2TAF9BETS1DPF2ARID1BPOLR2AZNF217GATA3RESTRB1TAF1YY1ZNF184ELF1JUNDATF3KLF16RAD21NCOR1NR2F6CREMESRRAZNF143NR2F2CHD4FOSL2SMC3BATFRXRATBL1XR1FOXA2HNF4ASKIEP300FOXA1KDM1AYY1
VSIG10GH12J118124-12:118125397:T:C5.5862Enhancer209-eQTLs,Distancechr12:118124004-118127205-
RNF2HDAC2MAXHDAC1RESTCREMATF3SKITBX3GABPASMARCC2ZBTB33RAD21HNF4GHNF4AGATA3GATA4SP1RXRATCF7JUNDFOXA2HNF1AFOXP1FOXA1NR2F6EGR1TBL1XR1YY1NCOR1TAL1FOSNR2F2ASH2LEP300ARID3AMAFKCREMASH2LGATA4TCF7SKIRXRAHNF4AHNF4GTBPSP1YY1EP300POLR2ANR2F6RBFOX2HNRNPLSP1HNF4AMAXRXRAYY1ZBTB33POLR2A
VSIG10GH12J118131-12:118132503:G:T5.6912Enhancer218-eQTLs,Distancechr12:118131185-118132863ENSR12_78XJXG, ENSR12_BTFZT
ZBTB33RBFOX2SIN3AZNF384HNF1AKDM1ARXRAPOLR2GZNF579ASH2LRBM22ZFXDPF2YY1IKZF2EP300NR2F2POLR2AEGR1SP1GABPAMTA2RAD21SKIMAXZBTB33TCF7HNF4AFOXA2NFICSMAD1LCORLNFIBATF3FOXK2IKZF1FOXA1RNF2TBX3CTCFMNTBHLHE40NR2F6RUNX3USF1BCL3
VSIG10GH12J118134-12:118139062:T:C6.3135Promoter/Enhancer427EliteeQTLs,Distancechr12:118134813-118140077ENSR12_93PW2S, ENSR12_532R8MX, PEBP1_1
L3MBTL2HDAC1BHLHE40ARNTUSF1MLLT1TRIM24CDC5LZNF574GATA3CC2D1AZBTB33TRIM28KDM1ASMARCA5ARNTIKZF1RBM25RBFOX2ZFXBCORZNF384ZMYM3RELBPHF8POLR2AZNF579POLR2GIKZF2CREMYY1MIER1TAF1EEDRAD21NRF1RESTHNF4AMAXASH2LEP300SIN3AHNRNPLLTBPE2F1ZNF24HDAC2ATF3ZBTB2MTA3L3MBTL2RCOR1MTA2TFAP4CTCFRBBP5HDAC1RBM39CEBPBPKNOX1ELF1ZNF444RFX5GATAD2BZNF143HCFC1FOXA1SP1RAD51MYCNEUROD1IRF1MBD2ZNF592MEIS2MNTGMEB1RNF2JUNDCREB1USF2CTBP1KDM5BMXI1CBX3BACH1MGAEGR1E2F6BHLHE40CREB3L1CBFBBRCA1ZBTB33USF1PAX5PMLESRRAC11orf30UBTFJUNSMAD5KDM5AKDM4BNFYBGATA4ELK1ZNF687ETS1SMARCA4RBM25NR3C1MITFEP400SAFBPRPF4ZNF263RBM34HNRNPUL1AGO2DPF2TAF15SIN3BPOU2F2FUSPHF20TCF12SMC3ATF2ZFP91SAP30IKZF1ZBTB7BATF7CHD1KDM4ARLFRB1HNRNPKNCOR1PCBP1FIP1L1ZBTB7ACLOCKRBM14PTBP1HNRNPLYY1SIN3AZBTB33E2F6NR2F1MXI1CREMMAXNR2F2NR2F6HMBOX1TFAP4JUNDATF3EGR1NR2C1RXRAHNF4AFOXA1SP1RFX1HNF4GHDAC2KDM1ARBM25KAT2BRBM22POLR2ACTCFSKISIN3AATF3ZBTB33RESTRAD21CCAR2ETS1JUNDYY1NCOR1ARID3AHNF1ARXRATFAP4TCF7FOSL2SOX13FOXA2SP1EGR1MAXNR2F2HDAC2HNF4ATBL1XR1NR2F6EP300HNF4GFOXA1CEBPBMAFKCREMPOLR2ARESTMAFFPOLR2GRBFOX2RBFOX2
VSIG10GH12J118167-None0.0000Enhancer112-Distancechr12:118167387-118167694-
MTA3NBNNFATC1MLLT1ZNF217GABPARCOR1ZNF143EEDIKZF1MTA2RELBCBX5MXI1CUX1TBP
VSIG10GH12J118175-12:118176148:C:A0.1889Enhancer121-Distancechr12:118175800-118176531-
DPF2IKZF1IKZF2MTA2NBNRELBATF7RUNX3TRIM22EP300BCL11ASPI1RESTBATFEBF1IRF4
VSIG10GH12J118181-None0.0000Enhancer82-Distancechr12:118181675-118181825-
CTCFSMC3ARID3AFOXA2RAD21FOXA1ZNF24SIN3A
VSIG10GH12J118182-12:118182601:A:G3.4694Enhancer237EliteDistancechr12:118182117-118183065ENSR12_93PWJB, ENSR12_532RJH2
CTCFSIN3ADPF2BCORARID1BGATA1GATA3MNTHDAC1CTBP1XRCC5MXI1RAD21GATA2SMC3NFICSOX6RUNX3EEDZNF143EP300YY1MYCHNF4AETV4TRIM22USF2ZNF24TBL1XR1MAXIKZF2SMARCA5RCOR1CREMRFX1RB1IKZF1FOXA1EGR1USF1RESTCEBPBEBF1MEF2BTBPSP1
VSIG10GH12J118187-12:118189574:ACAC:A1.0376Promoter/Enhancer454EliteeQTLschr12:118187578-118191018ENSR12_BTG9X, ENSR12_BTGB4, ENSR12_85GS8C
MXI1RNF2GATA1GMEB1ATF7CTBP1HDAC1SMARCA4CBFA2T3NCOR1TCF12GATA2TAL1MEF2BARID1BDPF2EBF1JUNDATF7ATF2ATF3CEBPBUSF1MXI1CTCFUSF2ZBTB33EP300BHLHE40POLR2ASPI1RFX1SIN3APOLR2AGATA2TBPASH2LMXI1EP300USF1USF2TAF1EP300ZNF384ZFP91PRDM10JUND
VSIG10GH12J118270-12:118272916:T:C6.5297Enhancer151-eQTLschr12:118270795-118273463ENSR12_BTGQ5
CHAMP1ZBTB33GATA3FOXA1NFE2L2ZHX2ELF1JUNDGATAD2BGATA3MBD2ZNF24CLOCKNFIBDPF2ZNF217ATF7ESR1RCOR1SMARCE1RAD51NCOA3FOSCTBP1FOXA1NEUROD1CLOCK
VSIG10GH12J118306-12:118308537:A:C5.9089Enhancer399EliteeQTLschr12:118306341-118309405ENSR12_CFPZ5
C11orf30ARID3AATF3SKILTBX21MAFKTRIM24NBNETV6BHLHE40MAFFZNF316MLLT1MYCCREMNFE2CEBPBPKNOX1FOSMTA2BCL11ASTAT3RUNX3EGR1JUNBIKZF1POLR2ANFYBIKZF2MEF2BNFE2L2BATFE2F4NFICTAF1MEF2CEBF1HMBOX1EEDCHD1SIN3AGATAD2BDPF2CTCFESRRASMARCA5ELK1ZNF217FOSRUNX3RCOR1MAFKJUNDSTAT3RAD21ZNF687TRIM22ESRRAATF7SRFELF1RFX1NFYBPKNOX1TBPBMI1E2F8ZBTB33IRF3GATAD2BHMBOX1
VSIG10GH12J118402-12:118402691:A:G2.0973Enhancer63EliteeQTLschr12:118402312-118402833ENSR12_93PZTZ
POLR2A
VSIG10GH12J118411-12:118411704:C:T6.0473Enhancer71-eQTLschr12:118411653-118413328-
C11orf30MAFKZNF316