GWAS Annotated: SHISA6

Gene: shisa family member 6

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
SHISA6GH17J010755-17:10757346:A:G0.8797Enhancer334EliteeRNA_co-expressionchr17:10755003-10758648ENSR17_9698X, ENSR17_96993, ENSR17_7M44K, ENSR17_8BJK2
PHF8POLR2ARBBP5TAF1RESTHDAC2BACH1MAFKYY1CTCFEGR1ZNF512BPCBP2ZNF444ZKSCAN1ESRRATAF1HNF4GCEBPBTCF12SKISP1RXRAYY1GABPAXRCC5ATF3ZBTB33ZNF217ZNF687JUNDEGR1RESTRAD21MYCMAXEP300GATA3HNF4AMBD2FOXA1DPF2MTA1ELF1NCOA3USF1SMARCE1FOXA2GATAD2BCTBP1IKZF2IRF4BATFRESTMAXYY1RXRAEGR1FOXA2FOXA1SP1ATF3HNF4AEZH2
SHISA6GH17J010768-None0.0000Enhancer27-eRNA_co-expressionchr17:10768942-10769218-
EP300
SHISA6GH17J011221-17:11222017:C:G0.2333Enhancer1-Distancechr17:11221923-11222053-
FOXA2FOXA1
SHISA6GH17J011240-17:11240728:C:T0.9117Promoter129-Distancechr17:11240399-11240801ENSR17_B488B
EZH2SUZ12CTCFRAD21SMC3POLR2AASH2LTAF1TBPRBBP5MXI1KDM4A
SHISA6GH17J011242-None0.0000Promoter129-Distancechr17:11241162-11241222ENSR17_B488B, SHISA6_1
CTCFTAF1
SHISA6GH17J011241-None0.0000Promoter129-Distancechr17:11241391-11241451ENSR17_B488B, ENSR17_54MDJP, SHISA6_2
CTCFTAF1KDM4A
SHISA6GH17J011302-None0.0000Enhancer1-Distancechr17:11302503-11302653-
EP300
SHISA6GH17J011303-None0.0000Enhancer1-Distancechr17:11302883-11302945--
SHISA6GH17J011330-None0.0000Enhancer36-Distancechr17:11330083-11330233-
USF1USF2
SHISA6GH17J011331-17:11330584:T:C6.5761Enhancer1-Distancechr17:11330535-11331477ENSR17_96HFN
RBBP5SMARCA4TCF12NANOG
SHISA6GH17J011487-None0.0000Enhancer36-Distancechr17:11487583-11487733-
SMARCA4CTCF
SHISA6GH17J011493-17:11494208:C:A1.1119Enhancer36-Distancechr17:11493603-11494296-
SMARCA4HDAC2