GWAS Annotated: PCDH17

Gene: protocadherin 17

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
PCDH17GH13J057527-None0.0000Enhancer56-Distancechr13:57527386-57527476-
HNF4ASP1ATF3
PCDH17GH13J057582-13:57582176:T:C1.8657Enhancer36-Distancechr13:57582086-57582236-
CTCFRAD21
PCDH17GH13J057629-13:57631787:GA:G3.1282Promoter/Enhancer537EliteDistancechr13:57629466-57633944ENSR13_BFFRM, ENSR13_5HJZMN, ENSR13_5HJZNK, ENSR13_9STLF, ENSR13_9STLR, ENSR13_5HJZWW, ENSR13_5HK24M, ENSR13_5HK265, ENSR13_9STMG, ENSR13_5HK2B7, ENSR13_5HK2BB, PCDH17_2, PCDH17_1
RNF2RAD21KDM4ASUZ12CTCFEZH2SMC3L3MBTL2MXI1POLR2AKDM1AHDAC2GATA2TAF1NR2F2EP300SP1NFYBRFX5EGR1NANOGIRF3PHF8YY1SIN3ATBPTAF7ELF4RESTSMARCA4PKNOX1FOSMXI1SUZ12CHD1RNF2RAD21PKNOX1POLR2ASMC3ZNF384L3MBTL2ASH2LGATA2GATA3EP300CTCFSIN3ASUZ12HDAC2RBBP5KDM4AYY1RNF2TAF1KDM4AUSF1ASH2LRBBP5PHF8CTCFPOLR2ASMARCA4YY1RAD21EP300JUNDRXRA
PCDH17GH13J057636-13:57638507:C:T3.5099Enhancer1-Distancechr13:57636744-57638939--
PCDH17GH13J057640-13:57640611:C:T2.5749Enhancer36-Distancechr13:57640101-57641383ENSR13_83NQFX
PKNOX1
PCDH17GH13J057643-13:57644596:C:T2.5582Enhancer1-eQTLs,Distancechr13:57643303-57645288--
PCDH17GH13J057655-13:57655868:T:TA3.4016Enhancer1-Distancechr13:57655438-57656848--
PCDH17GH13J057661-13:57661812:C:T3.5055Enhancer1-Distancechr13:57661230-57662331--
PCDH17GH13J057662-13:57662960:C:T3.5210Enhancer1-eQTLs,Distancechr13:57662549-57664469--
PCDH17GH13J057666-None0.0000Enhancer180EliteDistancechr13:57666244-57666589-
ZNF316MAFKMAFF
PCDH17GH13J057672-13:57673502:C:T2.2555Enhancer36-eQTLs,Distancechr13:57672826-57673510ENSR13_83NR5R
REST
PCDH17GH13J057726-None0.0000Enhancer98-Distancechr13:57726179-57726379-
MAFFMAFKRAD51
PCDH17GH13J057865-13:57865358:A:G0.8570Enhancer99-eQTLschr13:57865210-57866259-
TRIM28CTCFPKNOX1GATA1MEIS2TAL1
PCDH17GH13J058050-13:58051951:G:A2.8218Enhancer36-eQTLschr13:58050735-58052328-
NANOG