GWAS Annotated: MMS22L

Gene: MMS22 like, DNA repair protein

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
MMS22LGH06J096923-6:96923550:T:C0.7493Promoter/Enhancer481EliteTF_co-expressionchr6:96923393-96925522ENSR6_5SRJ96, ENSR6_BP8CM, ENSR6_5SRJG2, ENSR6_BP8CP
MLLT1IKZF1CTCFMTA2ESRRASIN3AGATAD2BNFRKBARID3ATRIM22CREB3L1DPF2TBX21KDM4AZBTB40BRD9POLR2ARLFPHF20RB1ZNF687RESTMNTNRF1TAF9BSKIPHF8SOX6RBFOX2TAF1RBBP5MITFPOLR2GRAD51GMEB1GATAD2ASMARCA5ELF4TBL1XR1L3MBTL2TAL1CBFA2T3TAF7GABPB1BHLHE40TBPMYCEP300EGR1YY1MAXHNRNPLLATF3MGAUSF2ZNF592GABPAELF1SMAD5E2F6EP400NFICZBTB7ACREMUSF1ASH2LKDM1AHNRNPLARID1BHNF4ACREB1RBM39IRF1FOXA1HDAC2ATF7SUZ12ZNF444CTBP1ZHX2KDM4BPKNOX1RFX1HDAC1SP1SKILIKZF2ZEB2EZH2SMARCA4ZNF282SIN3ANCOA1IKZF1CREMPHF21ANBNMLLT1BCORTBX21ARNTGATAD2AMTA2MTA1ZNF579PRDM10ELK1ZFP91BACH1ZNF143SMC3FOXK2ZNF184MYCBHLHE40ZNF207TCF12GMEB1PHF20RB1TBPRLFZBTB2ZNF639CTCFSMARCA5RUNX3RNF2NFICYY1GATAD2BRAD21PAX5HCFC1L3MBTL2ZSCAN29ZNF263NCOA6TRIM28ZNF24ZNF830SAP30MXI1ZBTB40BMI1RFX1
MMS22LGH06J097068-None0.0000Enhancer98-C-HiCchr6:97068636-97068952-
CTCFRAD21SMC3ZNF384
MMS22LGH06J097075-None0.0000Enhancer63-C-HiCchr6:97075828-97076039--
MMS22LGH06J097123-6:97124001:C:T1.0749Enhancer63-eQTLschr6:97123778-97124007-
MXI1
MMS22LGH06J097197-6:97197346:C:G0.9286Enhancer1-eQTLs,Distancechr6:97197184-97199694-
ATF4ZNF316
MMS22LGH06J097203-6:97203682:T:G0.1546Enhancer133-eQTLs,Distancechr6:97203375-97203685ENSR6_93FKP2
TCF7L2RCOR1
MMS22LGH06J097205-None0.0000Enhancer63-Distancechr6:97205938-97206227--
MMS22LGH06J097215-None0.0000Enhancer313EliteDistancechr6:97215246-97215973ENSR6_BP9WP, ENSR6_5STD9J
CTCFTRIM28RAD21TBL1XR1YY1RESTATF7SMC3ATF3ZNF384ZNF143JUNMXI1CEBPBSOX6ARID3ARFX5ATF2HDAC1EP300JUNDBHLHE40CREMPKNOX1ARID1BDPF2HMBOX1NFE2STAT5AE2F1MEIS2MAXGATA3ZNF316RCOR1SMARCA4GATA2
MMS22LGH06J097233-None0.0000Enhancer13-C-HiC,Distancechr6:97233159-97233485-
ATF2
MMS22LGH06J097262-6:97262657:CA:C0.5827Enhancer1-eQTLs,Distancechr6:97262400-97262800--
MMS22LGH06J097281-6:97282680:C:CG0.2082Promoter/Enhancer561EliteeQTLs,Distancechr6:97281064-97284000ENSR6_93FLJX, ENSR6_93FLK4, ENSR6_93FLK7, MMS22L_1
CEBPBFOSFOXA1SIN3APKNOX1UBTFSAP30ZFXSIN3ARBBP5ASH2LRBFOX2MYCCTCFHDAC2NR3C1MNTPHF8HDAC1STAT1AGO2POLR2APOLR2GKDM5AZBTB7BMLLT1GATAD2BNBNDPF2ATF7CTBP1ZSCAN29RLFZNF207IKZF2ZNF639PHF20ZFP91MXI1ZZZ3ZNF444TAF1CBFA2T3SIN3BEZH2RNF2KDM5BRBM39EP300EEDTRIM28ZNF24NFATC1TRIM24EGR1NRF1GMEB1HNRNPLELK1TAF15FIP1L1ARID3AMAXRAD21PMLGATA1E2F8CC2D1AIKZF1E2F1POU2F2CBX1TBL1XR1SMC3HNRNPLLBHLHE40CREB1KDM4BSKIZBTB7AETV4ELF1RUNX1TEAD4NFICCBFBBACH1RUNX3KDM4ARB1CREMESRRASP1ZBTB33GABPATRIM22EP400YY1SREBF2GABPB1TBPRELBE2F7HMBOX1E2F4IRF1SMAD5PAX5RESTHCFC1TAF7E2F6HDAC3CLOCKASH1LZHX1JUNDRCOR1HNF4APKNOX1CREB3L1MAFFFOXA1NFYBGATA3IRF5RBM25RFX5ZNF282BRCA1ZNF384ATF2NCOA1ZNF184ARHGAP35L3MBTL2SPI1E2F6MAXMGAZBTB40
MMS22LGH06J097306-6:97306785:T:C3.2048Enhancer242EliteC-HiC,Distancechr6:97306166-97307637-
RCOR1SMARCA4
MMS22LGH06J097401-6:97401925:G:C2.8075Enhancer71-Distancechr6:97401046-97402116ENSR6_93FMSC
ATF7ATF2JUNDGATA2