GWAS Annotated: CACNA1E

Gene: calcium voltage-gated channel subunit alpha1 E

GeneGHIDGWAS HitLead SNP-log10PTypeScoreEliteAssociation EvidenceLocationExternal LinksTFBSs
CACNA1EGH01J181251-1:181251208:A:C0.6116Enhancer143-Distancechr1:181251164-181251334ENSR1_B3BZ7N
TCF12FOSNR3C1JUNDFOXA1MEIS2PKNOX1MYCFOSL2STAT3
CACNA1EGH01J181255-1:181256157:T:C0.5871Enhancer173-Distancechr1:181255224-181256233ENSR1_94MXGN
GABPATCF12C11orf30SP1JUNDFOSMAFKCREB1TBPYY1BACH1NFE2L2ATF3MAFFSTAT3ZBTB33ATF7FOSL2RXRAMAXZNF316BHLHE40NR3C1ATF4CEBPBJUNHNF4AMYCCTCF
CACNA1EGH01J181398-None0.0000Enhancer149-Distancechr1:181398684-181398771-
TBX21MTA3POLR2AIKZF2MTA2NBNYY1ETV6ATF2EP300EEDJUNBNFATC1BCL11ADPF2TCF12BATFPAX5NFICATF7RUNX3SRFIRF4CREMIKZF1
CACNA1EGH01J181424-1:181425151:A:G0.2314Enhancer171-eQTLs,Distancechr1:181424964-181425194ENSR1_B3C25S, ENSR1_53KN6JR, ENSR1_53KN6K5
CTCFZNF263IKZF1RBM39SMC3IKZF2NBNEP300RAD21ZNF217MYCIRF1ETV6SMARCA5SIN3AGATA3NFICTAF7MLLT1ATF2STAT1TRIM22YY1CHD1RB1XRCC5KLF16IRF2ZNF143ZNF384ATF3JUNRESTJUNDZNF444ARID3AGATA1CEBPBFOXA1TBPBHLHE40FOSRUNX3
CACNA1EGH01J181440-1:181441503:G:GCTATA0.8497Enhancer91-eQTLs,Distancechr1:181440461-181442965-
ATF7PKNOX1ATF2CREB1RUNX3ESR1FOSHES1POLR2ACTCF
CACNA1EGH01J181446-1:181446888:A:G0.0665Enhancer6-C-HiC,Distancechr1:181446880-181447089--
CACNA1EGH01J181447-1:181448334:G:A0.7465Enhancer111-eQTLs,C-HiC,Distancechr1:181447746-181449418-
ZNF579TAL1CREMRUNX3TEAD4CBFA2T2PKNOX1CBFA2T3MEIS2
CACNA1EGH01J181450-1:181450573:C:T0.8679Enhancer121-eQTLs,Distancechr1:181450494-181454016-
IKZF2EEDNFICJUNBRUNX3IKZF1EEDJUNBTCF7BATFCTBP1SP1RXRAHNF4AGATA3STAT3FOSEP300ZFXSPI1RUNX3BATF
CACNA1EGH01J181469-None0.0000Enhancer168-C-HiC,Distancechr1:181469864-181470014ENSR1_94N2QM
ZNF263RNF2DPF2SMARCC2ARNTHDAC1SMARCA4GATA3CTCFJUNDFOSL2TEAD4HDAC2JUNBJUNZNF24CTBP1FOSATF3ARID1BNEUROD1GATAD2BNCOR1FOSL1MYCSMARCE1PHF21AKDM1ACBFA2T3ZNF444BHLHE40ZNF512B
CACNA1EGH01J181482-1:181482109:G:A1.0625Enhancer250EliteeRNA_co-expression,Distancechr1:181482025-181482714ENSR1_53KNJC6, ENSR1_87C3RK, ENSR1_94N2WC
SUZ12ZBTB33KDM4AEZH2CHD1CTCFGMEB1IKZF2IKZF1SIN3AHDAC6HNRNPLLNRF1NBNDPF2TBPTAF1RBBP5L3MBTL2KDM1ACTBP1ZNF143PAX5MXI1ZNF263TRIM28POLR2AZNF687TCF12RAD21RB1BHLHE40SPI1KDM4ASMC3ELF1YY1ASH2LZNF207GATAD2B
CACNA1EGH01J181483-None0.0000Promoter184-Distancechr1:181483301-181483361ENSR1_B3C2G8, CACNA1E_2
SUZ12EZH2MLLT1STAT3CREM
CACNA1EGH01J181484-None0.0000Promoter129-Distancechr1:181483467-181483527CACNA1E_1
SUZ12EZH2CREMSMC3
CACNA1EGH01J181485-None0.0000Enhancer99-eRNA_co-expression,Distancechr1:181485239-181485669ENSR1_B3C2GL
EEDIKZF1POLR2AEZH2MEF2BIRF4ZNF143ZNF687TCF12STAT5ARBBP5NFYBEBF1NFICTAF1ASH2LTBPGATAD2BRB1KDM1ABHLHE40DPF2REST
CACNA1EGH01J181490-1:181490543:GT:G0.1486Enhancer11-Distancechr1:181490375-181490563-
FOSMYC
CACNA1EGH01J181502-1:181505142:A:G1.4578Enhancer228EliteeQTLs,Distancechr1:181502764-181506123ENSR1_B3C2K6, ENSR1_CN29N
GATA2SMARCA4NFYBCTCFPKNOX1XRCC5POLR2ATRIM22ZNF143RAD21YY1SMC3STAT1PAX5MXI1ZEB1TCF12CREMNFATC3ZNF687SMARCA4NFYBMTA3TAF1NFATC1BMI1IKZF1NFICIRF4SKILETV6RUNX3DPF2ELF1ETS1BCL11ASPI1MLLT1ZNF217ARID3AIKZF2EBF1TBX21BATFMTA2SMARCA5ARNTZNF384NBNBHLHE40TCF12
CACNA1EGH01J181551-None0.0000Enhancer56-Distancechr1:181551304-181551454ENSR1_87C59G
RFX1BMI1
CACNA1EGH01J181583-None0.0000Enhancer137-Distancechr1:181583744-181583894ENSR1_87C5Z8
CTCFSIN3ARFX1SP1RAD21RXRAFOXA2USF1TEAD4ZNF143HNF4AFOXA1
CACNA1EGH01J181609-None0.0000Enhancer56-Distancechr1:181609104-181609314-
CHD7YY1EP300HDAC2NANOGUSF1
CACNA1EGH01J181664-None0.0000Enhancer6-Distancechr1:181664885-181665158--
CACNA1EGH01J181767-1:181769572:G:C1.3357Enhancer56-Distancechr1:181767245-181769830ENSR1_94N5Z2
STAT3RESTJUNBMYCPOLR2AFOSSTAT3
CACNA1EGH01J181783-None0.0000Enhancer36-Distancechr1:181783344-181783454-
SP1